André Yoshiaki Kashiwabara

Ph.D candidate of Computer Science

Institution
Instituto de Matemática e Estatística da Universidade de São Paulo (IME-USP)
Advisor
Prof. Alan Mitchell Durham

Research interests

Projects

EGene
an automated pipeline generation system.
Eimeria SCARdb
a database of SCAR molecular markers for Eimeria spp.

Publications

[1] André Y. Kashiwabara, Daniel Vieira, Ariane Machado-Lima, and Alan M. Durham. Splice site prediction using stochastic regular grammars (to appear in Genetics and Molecular Research in Jan. 07)

[2] André Y. Kashiwabara and Alan M. Durham. Biological signal prediction using stochastic regular grammar. Poster session at ISMB 2006, Fortaleza, Brazil, Aug. 2006.

[3] Alan M. Durham, André Y. Kashiwabara, Fernando T. G. Matsunaga, Paulo H. e Ahagon, Flávia Rainone, Leonardo Varuzza, and Arthur Gruber. EGene: a configurable pipeline generation system for automated sequence analysis. Bioinformatics , 21:2812---2813, Jun 2005.

[4] Sandra Fernandez, Angela M. Katsuyama, André Y. Kashiwabara, Alda Maria B. N. e Madeira, Alan M. Durham, and Arthur Gruber. Characterization of SCAR markers of Eimeria spp. of domestic fowl and construction of a public relational database (the Eimeria SCARdb). FEMS Microbiol Lett, 238:183 --- 188, Sep 2004.